{ "_id": "6ad5ca8c43d630dc48a402c8", "Package": "growthcurver", "Type": "Package", "Title": "Simple Metrics to Summarize Growth Curves", "Version": "0.3.1", "Date": "2020-10-3", "Authors@R": "person(\"Kathleen\", \"Sprouffske\", email = \"sprouffske@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Fits the logistic equation to microbial growth curve data\n(e.g., repeated absorbance measurements taken from a plate\nreader over time). From this fit, a variety of metrics are\nprovided, including the maximum growth rate, the doubling time,\nthe carrying capacity, the area under the logistic curve, and\nthe time to the inflection point. Method described in\nSprouffske and Wagner (2016) .", "LazyData": "TRUE", "URL": "https://github.com/sprouffske/growthcurver", "BugReports": "https://github.com/sprouffske/growthcurver/issues", "License": "GPL (>= 2)", "VignetteBuilder": "knitr", "RoxygenNote": "7.1.1", "Repository": "https://sprouffske.r-universe.dev", "Date/Publication": "2020-10-15 15:10:49 UTC", "RemoteUrl": "https://github.com/sprouffske/growthcurver", "RemoteRef": "HEAD", "RemoteSha": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-19 07:30:02 UTC", "User": "root" }, "Author": "Kathleen Sprouffske [aut, cre]", "Maintainer": "Kathleen Sprouffske ", "_user": "sprouffske", "_type": "src", "_file": "growthcurver_0.3.1.tar.gz", "_fileid": "https://r2.ropensci.org/ca6db8b1fd14043912427d9c48d927e45e0509c5c470051b22703c7e730b85e7", "_filesize": 749776, "_sha256": "ca6db8b1fd14043912427d9c48d927e45e0509c5c470051b22703c7e730b85e7", "_expires": "2027-01-27T07:45:14.000Z", "_created": "2026-10-19T07:30:02.000Z", "_published": "2026-10-19T07:45:16.034Z", "_buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117941200087, "time": 122, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12169588559" }, { "job": 117941200118, "time": 106, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12168964287" }, { "job": 117941200042, "time": 160, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12169978746" }, { "job": 117941200188, "time": 185, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12170676474" }, { "job": 117940217761, "time": 168, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12168769785" }, { "job": 117941200113, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12169897071" }, { "job": 117941200166, "time": 81, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12169926711" }, { "job": 117941200204, "time": 77, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12170075442" }, { "job": 117941200054, "time": 76, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12169278316" } ], "_upstream": "https://github.com/sprouffske/growthcurver", "_commit": { "id": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "author": "Kathleen Sprouffske ", "committer": "Kathleen Sprouffske ", "message": "version 0.3.1\n", "time": 1602774649 }, "_maintainer": { "name": "Kathleen Sprouffske", "email": "sprouffske@gmail.com", "login": "sprouffske", "description": "", "uuid": 3835724 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "minpack.lm", "version": ">= 1.2", "role": "Imports" }, { "package": "stats", "version": ">= 4.0", "role": "Imports" }, { "package": "graphics", "version": ">= 4.0", "role": "Imports" }, { "package": "grDevices", "version": ">= 4.0", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "sprouffske", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 50, "_contributors": [ { "user": "sprouffske", "count": 30, "uuid": 3835724 }, { "user": "fmkerckhof", "count": 5, "uuid": 2431458 }, { "user": "kieran-mace", "count": 1, "uuid": 18296227 } ], "_userbio": { "uuid": 3835724, "type": "user", "name": "Kathleen Sprouffske", "followers": 11 }, "_downloads": { "count": 758, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/growthcurver" }, "_mentions": 20, "_devurl": "https://github.com/sprouffske/growthcurver", "_searchresults": 224, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/growthcurver.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/sprouffske/growthcurver", "_realowner": "sprouffske", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2015-11-04" }, { "version": "0.2.0", "date": "2016-03-09" }, { "version": "0.2.1", "date": "2016-03-29" }, { "version": "0.3.0", "date": "2018-07-30" }, { "version": "0.3.1", "date": "2020-10-20" } ], "_exports": [ "gcfit", "gcvals", "NAtT", "SummarizeGrowth", "SummarizeGrowthByPlate" ], "_datasets": [ { "name": "growthdata", "title": "Simulated growth curve data", "object": "growthdata", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "time", "A1", "B1", "C1", "D1", "E1", "F1", "G1", "H1", "A2", "B2", "C2", "D2", "E2", "F2", "G2", "H2", "A3", "B3", "C3", "D3", "E3", "F3", "G3", "H3", "A4", "B4", "C4", "D4", "E4", "F4", "G4", "H4", "A5", "B5", "C5", "D5", "E5", "F5", "G5", "H5", "A6", "B6", "C6", "D6", "E6", "F6", "G6", "H6", "A7", "B7", "C7", "D7", "E7", "F7", "G7", "H7", "A8", "B8", "C8", "D8", "E8", "F8", "G8", "H8", "A9", "B9", "C9", "D9", "E9", "F9", "G9", "H9", "A10", "B10", "C10", "D10", "E10", "F10", "G10", "H10", "A11", "B11", "C11", "D11", "E11", "F11", "G11", "H11", "A12", "B12", "C12", "D12", "E12", "F12", "G12", "H12" ], "rows": 145, "table": true, "tojson": true } ], "_help": [ { "page": "gcfit", "title": "Creates an object of class gcfit.", "topics": [ "gcfit" ] }, { "page": "gcvals", "title": "Creates an object of type gcvals.", "topics": [ "gcvals" ] }, { "page": "growthdata", "title": "Simulated growth curve data", "topics": [ "growthdata" ] }, { "page": "NAtT", "title": "Number of Cells at Time t", "topics": [ "NAtT" ] }, { "page": "SummarizeGrowth", "title": "Summarize Growth Curves", "topics": [ "SummarizeGrowth" ] }, { "page": "SummarizeGrowthByPlate", "title": "Summarize Growth Curves", "topics": [ "SummarizeGrowthByPlate" ] } ], "_readme": "https://github.com/sprouffske/growthcurver/raw/HEAD/README.md", "_rundeps": [ "minpack.lm" ], "_vignettes": [ { "source": "Growthcurver-vignette.Rmd", "filename": "Growthcurver-vignette.html", "title": "Using Growthcurver", "author": "Kathleen Sprouffske", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Input data", "Background correction", "A simple first example", "Output metrics", "Get growth curves for a plate", "Customize growth curves for a plate", "Quality control and best practices", "Plot the curves and your data", "Check for poor fit notes", "Identify outliers" ], "created": "2015-10-21 13:53:09", "modified": "2020-10-03 15:25:49", "commits": 10 } ], "_score": 8.526339277389845, "_indexed": true, "_nocasepkg": "growthcurver", "_universes": [ "sprouffske" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.1", "date": "2026-10-19T07:32:20.000Z", "distro": "resolute", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/40b9189ab5d1cb332a8d7ad6ab77476d13aceba7920a1aebd6b6595c42ecfae0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.6.1", "os": "linux", "version": "0.3.1", "date": "2026-10-19T07:31:56.000Z", "distro": "resolute", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/0621a374be87355ba1a2c7f072aa88fa94db90cd6c620e23efda7f358bb3688f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.5.3", "os": "mac", "version": "0.3.1", "date": "2026-10-19T07:41:02.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/7d9312d8816b471a214a6104c12ca06a253afcfe2394c6e8c5fae443814ab7c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.6.1", "os": "mac", "version": "0.3.1", "date": "2026-10-19T07:43:52.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/4ebabe8df99640fc0643e98eac97ed692d58b136a66311292ba766ada01eeaae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.1", "date": "2026-10-19T07:31:55.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/89284e6fdfb15249a4cdb3de0803e49650eac81b0b81a72925fc951039111c73", "status": "success", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.7.0", "os": "win", "version": "0.3.1", "date": "2026-10-19T07:31:24.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/1e5642a9d0c14c122506a67da1340702bf9933f6473f5730790b06eae2cf76ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.5.3", "os": "win", "version": "0.3.1", "date": "2026-10-19T07:31:20.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/ed69a26a4a58fcc8685626590f72d3240914fab083fdededf724a73f47f32a54", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" }, { "r": "4.6.1", "os": "win", "version": "0.3.1", "date": "2026-10-19T07:31:18.000Z", "commit": "25ea4b301311e95cbc8d18f5c30fb4c750782869", "fileid": "https://r2.ropensci.org/26a6aea95a7d87c26123044fd0eda3f212ccddd60aa80bde22c0227cd7719be5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/sprouffske/actions/runs/39216068295" } ] }