Package: growthcurver 0.3.1
growthcurver: Simple Metrics to Summarize Growth Curves
Fits the logistic equation to microbial growth curve data (e.g., repeated absorbance measurements taken from a plate reader over time). From this fit, a variety of metrics are provided, including the maximum growth rate, the doubling time, the carrying capacity, the area under the logistic curve, and the time to the inflection point. Method described in Sprouffske and Wagner (2016) <doi:10.1186/s12859-016-1016-7>.
Authors:
growthcurver_0.3.1.tar.gz
growthcurver_0.3.1.zip(r-4.5)growthcurver_0.3.1.zip(r-4.4)growthcurver_0.3.1.zip(r-4.3)
growthcurver_0.3.1.tgz(r-4.4-any)growthcurver_0.3.1.tgz(r-4.3-any)
growthcurver_0.3.1.tar.gz(r-4.5-noble)growthcurver_0.3.1.tar.gz(r-4.4-noble)
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growthcurver.pdf |growthcurver.html✨
growthcurver/json (API)
# Install 'growthcurver' in R: |
install.packages('growthcurver', repos = c('https://sprouffske.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sprouffske/growthcurver/issues
- growthdata - Simulated growth curve data
Last updated 4 years agofrom:25ea4b3013. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-win | OK | Nov 02 2024 |
R-4.5-linux | OK | Nov 02 2024 |
R-4.4-win | OK | Nov 02 2024 |
R-4.4-mac | OK | Nov 02 2024 |
R-4.3-win | OK | Nov 02 2024 |
R-4.3-mac | OK | Nov 02 2024 |
Exports:gcfitgcvalsNAtTSummarizeGrowthSummarizeGrowthByPlate
Dependencies:minpack.lm
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Creates an object of class gcfit. | gcfit |
Creates an object of type gcvals. | gcvals |
Simulated growth curve data | growthdata |
Number of Cells at Time t | NAtT |
Summarize Growth Curves | SummarizeGrowth |
Summarize Growth Curves | SummarizeGrowthByPlate |