Package: growthcurver 0.3.1

growthcurver: Simple Metrics to Summarize Growth Curves

Fits the logistic equation to microbial growth curve data (e.g., repeated absorbance measurements taken from a plate reader over time). From this fit, a variety of metrics are provided, including the maximum growth rate, the doubling time, the carrying capacity, the area under the logistic curve, and the time to the inflection point. Method described in Sprouffske and Wagner (2016) <doi:10.1186/s12859-016-1016-7>.

Authors:Kathleen Sprouffske [aut, cre]

growthcurver_0.3.1.tar.gz
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growthcurver.pdf |growthcurver.html
growthcurver/json (API)

# Install 'growthcurver' in R:
install.packages('growthcurver', repos = c('https://sprouffske.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sprouffske/growthcurver/issues

Datasets:

On CRAN:

7.65 score 44 stars 102 scripts 684 downloads 20 mentions 5 exports 1 dependencies

Last updated 4 years agofrom:25ea4b3013. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 02 2024
R-4.5-winOKNov 02 2024
R-4.5-linuxOKNov 02 2024
R-4.4-winOKNov 02 2024
R-4.4-macOKNov 02 2024
R-4.3-winOKNov 02 2024
R-4.3-macOKNov 02 2024

Exports:gcfitgcvalsNAtTSummarizeGrowthSummarizeGrowthByPlate

Dependencies:minpack.lm

Using Growthcurver

Rendered fromGrowthcurver-vignette.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2020-10-03
Started: 2015-10-21